Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8984912/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  119,517,354
 Normal Paired: 113,077,428 (94.61%)
 Chimeric Paired: 4,713,790 (3.94%)
 Chimeric Ambiguous: 1,198,643 (1.00%)
 Unmapped: 527,493 (0.44%)
 Ligation Motif Present: 26,427 (0.02%)
Alignable (Normal+Chimeric Paired): 117,791,218 (98.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-30T09:17:30,267]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,105,546 (27.70%)
PCR Duplicates: 84,685,672 (70.86%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 34,197,174
Intra-fragment Reads: 14,574,004 (12.19% / 44.02%)
Below MAPQ Threshold: 8,441,710 (7.06% / 25.50%)
Hi-C Contacts: 10,089,832 (8.44% / 30.48%)
 Ligation Motif Present: 9,537  (0.01% / 0.03%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,579,710  (1.32% / 4.77%)
Intra-chromosomal: 8,510,122  (7.12% / 25.71%)
Short Range (<20Kb): 5,094,098  (4.26% / 15.39%)
Long Range (>20Kb): 3,416,003  (2.86% / 10.32%)